Errors using python 3.11
santanaw opened this issue · comments
Hi all. I received the next error message after running bonito --help
and any other command with python 3.11 (bonito installed with pip). I went back to python 3.10 and this fixed the error. Hope this helps.
ValueError: mutable default <class 'numpy.ndarray'> for field sd_arr is not allowed: use default_factory
@santanaw this should be fixed in v0.7.2.
$ python3.11 -m bonito --help
usage: bonito [-h] [-v] {basecaller,train,evaluate,view,convert,download,export,duplex} ...
options:
-h, --help show this help message and exit
-v, --version show program's version number and exit
subcommands:
valid commands
{basecaller,train,evaluate,view,convert,download,export,duplex}
additional help