nanoporetech / bonito

A PyTorch Basecaller for Oxford Nanopore Reads

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question about LSTM cuda kernel in bonito

zwshan opened this issue · comments

commented

hello,
Does bonito make any specific improvement in LSTM CUDA kernel ?

Or bonito use the pytorch original LSTM CUDA kernel?

If bonito use the original LSTM CUDA kernel, I want to optimize it.

Thank you

hello @zwshan bonito already uses an optimised version.