naglemi

cubeglm

Python implementation of general linear model for quantifying fluorophores in fluorescent hyperspectral images

mtmcskat

Cluster-friendly interface for SKAT with adaptive resampling, multi-threading over SNP windows and permutations, and higher-level parallelization over chromosomes/scaffolds.

GMOdetectoR

InPlantaGWAS

GMOnotebook

Templates for workflows cross-analyzing fluorescent hyperspectral regression with deep segmentation to study plant tissue culture transformation rates

gpt-revcomp-eval

Evals for GPT model abilities to provide reverse complements of DNA sequences

AgroCulture

AgroCulture

CpGWAS

Tools to support Methylome-wide Association Studies (MWAS), not to be confused with Metabolome-Wide Association Studies (the other MWAS)

cubeml

Interface to apply machine learning to segmentation of hyperspectral images (hypercubes)

dpl_u19

Deep Learning for Life Scientists Pilot

GMOlabeler

Python/R code for cross-analyzing fluorescence and semantic segmentation results to calculate statistics for development of specific transgenic plant tissues

Pheno_odk_test

A test repo demonstrating design pattern -based phenotype ontology development using the Ontology Development Kit

terminal_jupyter_intro

Introduction tutorial for command line basics

DenseNet

Contamination Classification DenseNet

elastictorch

Pytorch implementation of ElasticNet, intended for investigative benchmarking at this time.

evals

Evals is a framework for evaluating LLMs and LLM systems, and an open-source registry of benchmarks.

factorimg

Simple Python package to evaluate color palettes in semantic segmentation masks

GMOGUI

Graphical interface for the high-throughput phenotyping of plant transformation and regeneration (GMOdetector)

rslurm

Submit R code to a Slurm cluster

T-LOC

TensorFlow-Examples

TensorFlow Tutorial and Examples for Beginners with Latest APIs