mwsill

IlluminaHumanMethylationEPICv2manifest

mnp_training

DNA methylation-based classification of central nervous system tumours

RFpurify

RF model and functions to estimate tumor purity using methylation data

s4vd

conumee-2

resume

Resume/CV template using RMarkdown and LaTeX

sample_size_diagnostic_test

Shiny app to calculate sample size for phase 2 studies: Retrospective validation of a binary test

c060

Boruta

:exclamation: This is a read-only mirror of the CRAN R package repository. Boruta — Wrapper Algorithm for All Relevant Feature Selection. Homepage: https://gitlab.com/mbq/Boruta/ Report bugs for this package: https://gitlab.com/mbq/Boruta/-/issues

Boruta-Shap

A Tree based feature selection tool which combines both the Boruta feature selection algorithm with shapley values.

computer-science

:mortar_board: Path to a free self-taught education in Computer Science!

conumee

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/conumee.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=conumee.

dna-me-pipeline

DCC/DAC methylation pipeline source

IlluminaHumanMethylationEPICmanifest

Biocondcutor package IlluminaHumanMethylationEPICmanifest based on MethylationEPIC_v-1-0_B4.csv

machine-learning-book

Code Repository for Machine Learning with PyTorch and Scikit-Learn

mcibersort_scripts

scripts used for Grabovska et al methylCIBERSORT analysis

mgmtstp27

Automatically exported from code.google.com/p/mgmtstp27

minfi

Devel repository for minfi

ml4calibrated450k

This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estimating class probabilities for personalized cancer diagnostics on DNA methylation microarray data"

mml-book.github.io

Companion webpage to the book "Mathematics For Machine Learning"

MONOD2

MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data

MuSiC

Multi-subject Single Cell Deconvolution

ncvreg

Regularization paths for SCAD- and MCP-penalized regression models

randomForest

:exclamation: This is a read-only mirror of the CRAN R package repository. randomForest — Breiman and Cutler's Random Forests for Classification and Regression. Homepage: https://www.stat.berkeley.edu/~breiman/RandomForests/

ranger

A Fast Implementation of Random Forests

Rtsne

R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding

stanford-cs-229-machine-learning

VIP cheatsheets for Stanford's CS 229 Machine Learning

vitae

R Markdown Résumés and CVs

webr

wsds2017