M Wang's repositories
SuperExactTest
Statistical testing and visualization of mult-set intersections
sunburst.shiny
A simple web-based interface to create sunburst visualization of a network hierarchy.
bioconda-recipes
Conda recipes for the bioconda channel.
cpa
The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell level. CPA performs OOD predictions of unseen combinations of drugs, learns interpretable embeddings, estimates dose-response curves, and provides uncertainty estimates.
cyjShiny
An R/shiny widget for cytoscape.js
dqshiny
Enhance Shiny Apps with Customizable Modules
leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
Linear_Algebra_With_Python
Lecture Notes for Linear Algebra Featuring Python
ncells
Calculating the number of cells in single cell RNA-seq experiments
r-cytoscape.js
An HTMLWidgets package for CytoscapeJS which can be used to produce standalone figure or for embedding in Shiny applications.
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
SCP
SCP provides a comprehensive set of tools for single cell data processing and downstream analysis.
Shiny
Advanced Shiny usage cases
single_cell_portal_core
Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
statsLib
Statistical inference library
SuperExactTest.shiny
A shiny application for statistical test and visualization of multi-set intersections.