Houshi_Xu's repositories
single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
advanced-shiny
🤹 Shiny tips & tricks for improving your apps and solving common problems
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Beautiful-Visualization-with-R
《R语言数据可视化之美》配套代码
her2st
Her2 Breast Cancer Project
ImmuneResistance
This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".
IOBR
IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
oralAtlas
Code used in oral atlas manuscript
scMetabolism
Quantifying metabolism activity at the single-cell resolution
SLC11A1
source code and data for paper
ST-analysis
General notes and resources on how to analyze Spatial Transcriptomics data
stLearn
A novel machine learning pipeline to analyse spatial transcriptomics data
tabula-muris
Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
uphyloplot2
Draw phylogenetic trees of tumor evolution