Murthy lab

GLMHMM

codex

Explore the FlyWire Connectome

leap

LEAP Estimates Animal Pose

fly-vr

FlyVR is code for design and control of multisensory virtual reality experiments for flies.

DeepFlyTrack

New version of fly tracker that uses keras/deep networks to track flies

MurthyLab_FlySongSegmenter

Murthy lab version of FlySongSegmenter (FSS) - see Coen et al. Nature 2014 and Clemens et al. Curr Biol 2018

one2one-mapping

Model weights, example stimuli, and code for the paper "One-to-one mapping between deep network units and real neurons uncovers a visual population code for social behavior".

GLMvirilis

code for fitting the GLM filters in LaRue et al. (2015)

leap_rigs

Code for running experiments on the LEAP rigs.

sleap-notebooks

Jupyter notebooks for running SLEAP on Google Colaboratory

flywire-visual-neuron-types

Annotations of visual neuron types in the FlyWire Connectome

Meshdown

Download 3D meshes from FlyWire via Docker

noIPIcycles

code and data for Stern et al. (2017)

pulseTypeClassifier

pulses in, Pfast & Pslow out

pulseTypePipeline

analysis pipeline for classifying song pulses in Drosophila

pybmt

Python Ball Motion Tracking (pymbt): A python interface for FicTrac (https://github.com/rjdmoore/fictrac)

virilisSongSegmenter

Code for analyzing the courtship duets of Drosophila virilis from audio recordings

fictrac

FicTrac: A webcam-based method for tracking spherical motion and generating fictive animal paths.

FlyCaImAn

Calcium Imaging Processing Pipeline of 3D time series

FLyTRAP

Code for analyzing playback experiments in Deutsch et al. (2019).

flywire-network-analysis

Analysis scripts for the network analyses of the Flywire connectome. Publication: "Network Statistics of the Whole-Brain Connectome of Drosophila"

python-motifapi

Python API to control Motif recording systems