murrayrm

fbs2e-python

FBS2e examples in Python

ntg

Nonlinear trajectory generation library

python-control

bbedata

sparrow

-large-Minimizing-the-Impact-of-Information-Latency-via-Outformation-

asv-river-mapping

ASV River Mapping Project

BI-BE-CS-183-2023

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

BioCRNPyler

A modular compiler for biological chemical reaction networks

bioscrape

bioscrape (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)

buildacell.github.io

ccl

This library has functions for parsing ccl (the language used by gro) into a set of C++ objects.

control-feedstock

A conda-smithy repository for control.

gr1c

a collection of tools for GR(1) synthesis and related activities

gro

The gro bacterial micro-colony growth specification and simulation software. For more information see the gro website, listed below.

harold

An MIT licensed systems and controls toolbox for Python.

liposome-kit

Build-A-Cell protocol for making liposomes

mls

Source code for MLS software

papers-bit

simulac

slycot

slycot-feedstock

A conda-smithy repository for slycot.

subsbml

Python package for managing systems and subsystems of SBML models

traffic-intersection

This is an example of the design-by-contract method

tulip-control

Temporal Logic Planning toolbox

txtlsim

Cell-free expression modeling toolbox for MATLAB

txtlsim-python

Cell-free simulation toolbox in Python