multitalk

awesome-cell-cell-communication

Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics

scCrossTalk

Infer and visualize cell-cell communication for single-cell RNA-seq data

miRTalk

Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data

SpatialKidney

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Beautiful-Visualization-with-python

python数据可视化之美

CCL-cGPS-1

CCL-cGPS: a clinical genomics-guided prioritizing strategy enables accurately selecting proper cancer cell lines for biomedical research

CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

cellphonedb

CellTalkDB

A manually curated database of literature-supported ligand-receptor interactions in human and mouse

clash_for_windows_pkg

A Windows/macOS GUI based on Clash

DeepSort

Reference-free Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network

garnett

Automated cell type classification

Giotto

Single-cell spatial analysis toolbox

github-readme-stats

:zap: Dynamically generated stats for your github readmes

listen1_desktop

one for all free music in china (Windows, Mac, Linux desktop)

lx-music-desktop

一个基于 electron 的音乐软件

MouseLR-atlas

A single-cell spatial-temporal transcriptomic atlas of normal and fibrotic liver regeneration

multinichenetr

multitalk

nichenetr

NicheNet: predict active ligand-target links between interacting cells

PPMS

Pri-miRNA profiling for single-cell RNA-seq data

scCATCH

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

scmap

A tool for unsupervised projection of single cell RNA-seq data

seurat

R toolkit for single cell genomics

SiGra

Single-cell spatial elucidation through image-augmented graph transformer

SingleCellSignalR_v1

R package

SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

SpaTalk

Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data

spatial-datasets

overview of spatial datasets