mult1fractal

bx_Phageboost

bx_Phigaro

bx_PhiSpy

bx_seeker

bx_Virsorter-2

case-group.github.io

docker_pipelines

Nextflow/Docker pipelines for "easy use"

github-dive

kitslist

list of kits from nanopore

meta_playground

mx_ggplots

mx_GUI_sequence_upload

read_until_analysis

sample-me

script_collection

repo where I store my data-analysis scripts

test-github-repo

test tutorial

What_the_Phage

WtP: Phage identification via nextflow and docker or singularity

wtp-documentation

https://mult1fractal.github.io/WtP.github.io/

WtP_phage_reference_db-WtP_v0.9.0

WtP_test-data

WtP_test_profile_results

adaptive_sampling_decision_splitter

Biofilm-Viability-Checker

This macro writtin for use with Fiji (ImageJ) processes multiple confocal images of live/dead stained biofilms, outputting the number of bacteria pixels in the red channel and both channels respectively to calculate the viability of the biofilm. It also saves overlay images showing the bacteria which have been detected.

bx_hue_heatmap

gcloud_backup_upload_data

kraken2_crawler

Kraken 2 workflow for testing different kraken parameter in gcloud

local_blastn

PathogenSeq-Core-Facility.github.io

https://mult1fractal.github.io/PathogenSeq-Core-Facility.github.io/

pod5_docker

pop_the_mod