muellerflorian

big-fish-examples

Notebooks to illustrate how BigFISH is working.

corona-fish

hani-ms2

ImJoy

Image processing with joy

parker-rna-loc-elegans

Collection of code to analyze RNA localisation from smFISH images.

apiFISH

big-fish

Toolbox for the analysis of smFISH images.

cell_type_calling_2channels

cellpose

a generalist algorithm for cellular segmentation

cornes-rna-loc

docsify

🃏 A magical documentation site generator.

fq-docs-interactive

hotspot

Matlab package to quantify translation/transcription hotspots

ImJoy-demo-project

Demo project for ImJoy

imjoy-docs

ImJoy Docs: Interactive documentation powered by ImJoy and docsify

ImJoy-Plugins

Plugin repository for ImJoy.IO

imjoy-starter

jupyter-engine-manager

A wrapper for @jupyterlab/services and other utility functions for connecting to Jupyter kernels in ImJoy.

kaibu

Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.

locFISH_deepzoom

Deepzoom images for locFISH

muellerflorian

starfish

*fish -- A standardized analysis pipeline for image-based transcriptomics

stitch_seg_detect

walesky-rna-loc-liver

Code to analyze RNA localization in smFISH images.