mucahitrtn

mxnet

Lightweight, Portable, Flexible Distributed/Mobile Deep Learning with Dynamic, Mutation-aware Dataflow Dep Scheduler; for Python, R, Julia, Scala, Go, Javascript and more

segmentation_models.pytorch

Segmentation models with pretrained backbones. PyTorch.

Transformers-Tutorials

This repository contains demos I made with the Transformers library by HuggingFace.

super-gradients

Easily train or fine-tune SOTA computer vision models with one open source training library. The home of Yolo-NAS.

reading

A list of computer-science readings I recommend

RT-DETR

[CVPR 2024] Official RT-DETR (RTDETR paddle pytorch), Real-Time DEtection TRansformer, DETRs Beat YOLOs on Real-time Object Detection. 🔥 🔥 🔥

DLTK

Deep Learning Toolkit for Medical Image Analysis

CLAM

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

grad-cam-pytorch

PyTorch re-implementation of Grad-CAM (+ vanilla/guided backpropagation, deconvnet, and occlusion sensitivity maps)

show-me-chatgpt-plugin

Create and edit diagrams in ChatGPT

Principles-of-Machine-Learning-Python

Principles of Machine Learning Python

cucim

cuCIM - RAPIDS GPU-accelerated image processing library

YOSO

Code release for paper "You Only Segment Once: Towards Real-Time Panoptic Segmentation" [CVPR 2023]

Battle-of-the-Backbones

CellViT

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

Guided-I2I-Translation-Papers

Guided Image-to-Image Translation Papers

FAST-Pathology

⚡ Open-source software for deep learning-based digital pathology

pathology-whole-slide-data

A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

detr

End-to-End Object Detection with Transformers

GPT4V-Medical-Report

deepfocus

SNOW-Dataset

[Scientific Data] The official code of "A Large-scale Synthetic Pathological Dataset for Deep Learning-enabled Segmentation of Breast Cancer"

torch-staintools

Pytorch-adaptation of GPU-accelerated StainTool's stain normalization algorithms

TILs_Analysis

Pan-cancer tils analysis study by Hongming Xu

viz-dnn-blobs-ocv

A tutorial to visualize the deep learning blobs generated by the OpenCV dnn module.

MuTILs_Panoptic

Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs model and PanopTILs dataset. medRxiv 2022.01.08.22268814.

histolab

Library for Digital Pathology Image Processing

HTT

Repository with Data, scripts, and functions of the High-Throughput Truthing project (HTT project).

Automated-PD-L1-Scoring

This repository describes a workflow for automated PD-L1 scoring of Tumor Proportion Score (TPS), Combined Positive Score (CPS) and Immune Cell Score (ICS) with QuPath and MATLAB.

PD-L1-TPS