mtvector

MT Schmitz's repositories

A set of tools for the biologists who sequence RNA or watch cells in the Thomson Lab

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Resources from The development and evolution of inhibitory neurons in primate cerebrum

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Python implementation of MULTIseq barcode alignment using fuzzy string matching and GMM barcode assignment.

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Single Cell Analysis scripts and pipelines

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Download genome annotations and prepare them to be made into reference annotations (e.g. with cellranger or cellranger-arc)

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This repository contains our CellTag CloneHunter R package for clone-calling.

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Analysis of bone stromal cells.

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Scripts to build kallisto annotations for new species using CAT gtfs

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Collection of functions from across repos

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Variational Inference for Cell Type Evolution

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Single-cell epigenomics analysis tools

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Scripts for building genomics references

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Sharing dirty scripts for the trashscope™

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