mtisza1 / teddy_vir_bac_marker_gene

Scripts for reproducing TEDDY virome/bacteriome analyses and figures

teddy_vir_bac_marker_gene

Scripts for reproducing TEDDY virome/bacteriome analyses and figures

Using renv to load the versioned libraries and run analyses in RStudio

1. If not done already, git clone this repo

2. In the Finder, double click on teddy_vir_bac_marker_gene.Rproj to load the project in RStudio

3. use renv to install the necessary libraries

renv::restore()

Python package versions used in these analyses

python: 3.9.12

pandas: 1.4.2

numpy: 1.22.3

scipy: 1.8.0

sklearn: 1.0.2

matplotlib: 3.5.1

re: 2.2.1