mstrazar

mklaren

A Python Multiple kernel learning library.

iONMF

Integrative orthogonal non-negative matrix factorization

orange3-recommendation

Add-on for Orange3 to include support for scalable collaborative filtering solutions applied in large recommender systems.

csDEX

Condition-specific differential exon expression statistical tests

mstrazar.github.io

Martin's landing page.

xenoturbella

Single-cell RNA sequencing analysis of Xenoturbella Bocki.

enCount

enCount-data

Test data for the enCount.

iDeepE

inferring RBP binding sites and motifs using local and global CNNs

MF

nimfa - A Python Library for Nonnegative Matrix Factorization Techniques

mmvec

Neural networks for microbe-metabolite interaction analysis

orange-bio

orange3

orange3-bioinformatics

orange3-prototypes

Prototype Orange widgets — only for the brave.

pytorch_geometric

Graph Neural Network Library for PyTorch

quoTerm

switchit

The repository provides scripts, used for modeling a bistable switch based on designed DNA binding elements in mammalian cells. Reference: Lebar, Tina, Urban Bezeljak, Anja Golob, Miha Jerala, Lucija Kadunc, Boštjan Pirš, Martin Stražar, Roman Jerala et al. "A bistable genetic switch based on designable DNA-binding domains." Nature communications 5 (2014).