Memorial Sloan Kettering

mimsi

Microsatellite Instability Classification using Multiple Instance Learning

roslin-variant

Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis

Halo_Melanoma_IL2

Code for Melanoma paper

toil

A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python

GetBaseCountsMultiSample

artisan-fhir-server

dragen_util

Helper DRAGEN scripts

msisensor

pipeline-kickoff

sample-qc-node

ACCESS_SV

SV calling scripts for ACCESS

ImmunoSarc

blaze-docs

Documentation for the MSK Clinical Research FHIR Server

bunny

Reproducible Analyses for Bioinformatics - Java; used for Voyager

cmoflow_facets_cwl

CWL to mimic the logic in cmoflow_facets

connexion

Swagger/OpenAPI First framework for Python on top of Flask with automatic endpoint validation & OAuth2 support

dmp-to-igo

fero

Convert familiar MPGR files to beagle-friendly metadata json, importable into Voyager

genomeNexflow

Nextflow implementation of Genome Nexus annotation tools.

igo-run-planner

losslessbam

temp. repo for losslessbam creation workflow

MSKCC-component-integration

pctGCdata

R datasets of GC percentages for human and mouse genomes

redcap-data-dictionary-diff

A tool for analyzing and displaying the differences between two REDCap data dictionaries. Outputs into an Excel spreadsheet.

sample-submission-frontend

smile-irt-publisher

smile-message-publisher

Spring Boot LIMS SampleMetadata publisher framework

twig-lint

Standalone twig linter.

variant-overlap

voyager-utils