mscipio

occiput-suite

Tomographic reconstruction software for PET, PET-MRI and SPECT in 2D, 3D (volumetric) and 4D (spatio-temporal) in Python.

NiftyRec

NiftyRec is a software toolbox for Tomographic image reconstruction. NiftyRec is written in C and computationally intensive functions have a GPU accelerated version based on NVidia CUDA. NiftyRec includes a Matlab Toolbox and a Python Package that access the low level routines, hiding the complexity of the GPU accelerated algorithms.

KMtoolbox

Kinetic Modeling Toolbox designed to estimate kinetic parameters from 4D PET and DCE-MRI dataset at a ROI level

MATLABtools___nbin_mu

Negative Binomial Distribution: update of the Matlab functions related to NBin distribution so that it can be defined with respect to mu (mean) and alpha (dispersion) parameters

Accelerating-PET-Kinetic-Modeling

Example code related to publication "Accelerated PET kinetic maps estimation by analytic fitting method"

gpuKMfit

GPU-CUDA toolbox for fitting compartmental models to 4D medical dynamic volumes, based on Maximum-a-Posteriori Levemberg-Marquardt optimization of non-linear kinetic models implemented using pyCUDA and cuBLAS python interfaces.

hugo_website

hugo_website

KMtorch

Kinetic Modeling library built on top of Pytorch

occiput

Tomographic vision

Lectures

Lectures given at university

coursera-test

Coursera test repository

DockerImage

Docker (development) image with everything set up to work with `tomolab` and `NiftyRec`

docs

TensorFlow documentation

Doing_bayesian_data_analysis

Python/PyMC3 versions of the programs described in Doing bayesian data analysis by John K. Kruschke

dPETSTEP

Dynamic PET simulator of tracers via emission projection for kinetic modeling and parametic image studies

dynastyFF-website

Create a custom league page for your Sleeper fantasy football league!

EMBC2019

poster and proceeding for the EMBC 2019, Berlin (Germany), July 23-27, 2019

Gpufit

GPU-accelerated Levenberg-Marquardt curve fitting in CUDA

interfile

Python library for parsing interfile files

intro-git

A repository to practice your git skills

MLcontainer.Singularity

mscipio.github.io

nbpapaya

View brain images in the ipython notebook using papaya.js

NiftyRec-1

NiftyRec is a software toolbox for Tomographic image reconstruction. NiftyRec is written in C and computationally intensive functions have a GPU accelerated version based on NVidia CUDA. NiftyRec includes a Matlab Toolbox and a Python Package that access the low level routines, hiding the complexity of the GPU accelerated algorithms.

old_website

rawdatarinator

Read Siemens raw data

TomoLab

Python 3 porting of the previous project `Occiput.io`, which is now no longer supported

zsh-custom-config

Custom zshrc file and plugin folder