Mikkel Schöttner's repositories
abide-fmri
Repository for the Brainhack School 2020 team working with fMRI and ABIDE data to train machine learning models.
bids_script
Script to get data from the folder into BIDS
brainhack_visualization
Repo to host the interactive plot that is the deliverable of week 3 of the brainhack 2020.
connectomemapper3
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, and resting/state functional MRI processing pipelines, from raw T1 / DWI / BOLD data to multi-resolution brain parcellation with corresponding connection matrices.
ds001907-EDU
Fork of the original OpenNeuro dataset, in order to make proper BIDS for the ReproNim/OHBM 2022 Educational course.
hackzurich2020-17
Repository for our project at HackZurich2020
interpret-iqms
Interpreting the IQMs of MRIQC
master-thesis
Code for my Master thesis "Psychopathic Traits and Social Cognition: Effective Connectivity in Theory of Mind and Empathy Networks".
mschoettner.github.io
My personal website.
OHBMEducation-2022
Repo for the OHBM Education 1/2 day course entitled: "How to Write a Re-Executable Publication"
openscienceguide
This is a short introductory guide on how to do neuroimaging studies using open research practices. Focus lies on introducing the tools and why you should use them. A lot of helpful resources are linked that describe each tool in more detail.
pymc-resources
PyMC educational resources