msauria

minUniqueKmer

Program for calculating the minimum unique k-mer values, both left- and right-anchored for a set of fasta sequences

misha-package

Git version of Tanaylab misha-package bitbucket repo

T2T_Encode_Analysis

Scripts for recapitulating the Encode reanalysis using the T2T chm13 reference assembly

T2T_MUK_Analysis

T2T Minimum Unique K-mer Analysis

3DChromatin_ReplicateQC

Software to compute reproducibility and quality scores for Hi-C data

basenji

Sequential regulatory activity predictions with deep convolutional neural networks.

bioconda-recipes

Conda recipes for the bioconda channel.

bone101

Web-hosted documentation on BeagleBone enhanced with BoneScript and live-running tutorials

comp_calling

coursera-test

galaxy

Data intensive science for everyone.

genomedisco

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

hifive

Tools for handling HiC and 5C data

higlass-docker

Builds a docker container wrapping higlass-server and higlass-client in nginx

HiGlass_Galaxy_IE

A HiGlass interactive environment for Galaxy

HMM_Tree

HSMM

IDEAS

Jointly characterizing epigenetic dynamics across multiple cell types

Interaction_Hub

Database tools for analysis of all HiC data. Period.

KMC

Fast and frugal disk based k-mer counter

nuc_dynamics

Particle dynamics and simulated annealing for chromosome structure calculation

pyBigWig

A python extension for quick access to bigWig and bigBed files

qbb2020-answers

Answers and annotated notebooks for Quantitative Biology Bootcamp 2020

qbb2022-answers

Quasar_Paper

T2T_Kmer_Analysis

Tree_HMM

VISION_ERP_Modeling

Enhancer regulatory prediction modeling on a per-gene basis from the VISION consortium data

Vision_JointDistance

xled

🎄Unofficial control for Twinkly - Smart Decoration LED lights.