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ms609 / Quartet

R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)

Home Page:https://ms609.github.io/Quartet/

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Allow comparison when tips aren't identical

ms609 opened this issue · comments

commented

Simply modify QuartetStatus() to add u / r1 / r2 entries according to the number of quartets across all leaves not resolved by each tree, calculable by computing a confusion table across all leaves and using choose() before dropping non-overlapping leaves and launching tqDist.