mrwangyz / shinyCircos-V2.0

shinyCircos

shinyCircos-V2.0：an R/Shiny application for interactive creation of Circos plot

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shinyCircos-V2.0 is the latest version of shinyCircos. We have improved a lot of details and optimized the code. Welcome to try and give us feedback and bugs.

URL of shinyCircos-V2.0:https://venyao.xyz/shinyCircos-V2.0/.

At present, shinyCircos-V2.0 is still a beta version, if you encounter problems during use, please use the old version or contact us.

Welcome to the telegram group:https://t.me/+NadFeZazBBc2Y2U1

installation steps

First step： download the code to the local, decompress it and move it to a convenient location, for example: "D:\apps\shinyCircos-V2.0"

second step： Use R to execute the following code to install the necessary dependencies

install.packages("shiny")
install.packages("circlize")
install.packages("bs4Dash")
install.packages("DT")
install.packages("RColorBrewer")
install.packages("shinyWidgets")
install.packages("data.table")
install.packages("shinyBS")
install.packages("sortable")
install.packages("shinyjqui")
install.packages("shinycssloaders")
install.packages("colourpicker")
install.packages("gridBase")
install.packages("BiocManager")
BiocManager::install("ComplexHeatmap")
#If the installation is unsuccessful, please check the solution by yourself

third step： Run the code to start shinyCircos-V2.0, then you can see the page in the default browser

runApp("D:/apps/shinyCircos-V2.0/",launch.browser = TRUE)