mruffalo

ddrescue

Unofficial GNU ddrescue repository

sc-rna-seq-pipeline

hash-db

Manage a simple database of SHA512 file hashes

fourfront

Data portal for submitting and viewing genomic data

multi-docker-build

Build multiple Docker containers in sequence

anndata

Annotated multivariate observation data

beamer-theme-cmu

A basic Beamer theme for Carnegie Mellon University, inspired by Montpellier

biopython

Official git repository for Biopython (converted from CVS)

brca-treatment-response

cellranger-docker

cellranger-pipeline

chromvar-cwl

CWL workflow for chromVAR

chromvar-docker

Dockerfiles for containerized chromVAR analysis

chromvar-rdata-to-anndata

cisTopic

cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

cwl-airflow

Python package to extend Airflow functionality with CWL1.1 support

data-path-utils

Management of scripts that produce/consume data with specific labels

docker-star

Docker container for the star aligner

dropEst

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

epiScanpy

Episcanpy: Epigenomics Single Cell Analysis in Python

epub-mobi-convert

Conversion of EPUB ebooks to MOBI format

git-maintain

htseq

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

ims_pipeline

maxflow-mathprog

MathProg implmentation of maximum flow graph problem

mut-edge-disrupt

scipy

Scipy library main repository

seurat-to-anndata

Convert Seurat objects to AnnData, and write as H5AD

snovault

Broken version of the SnoVault general purpose hybrid object-relational database

vpolo

To remember what have been lost !