mruehlemann

Malte Rühlemann's repositories

16S_Tutorial

Language:ShellMIT700

german_mgwas_code

Language:R600

ikmb_amplicon_processing

Language:RGPL-3.03 20

DBF_test

Language:R2 20

MAGScot_benchmarking_scripts

Language:Shell200

rep-cookbook

Replication Cookbook for FGFP GWAS

Language:R200

greatapes_mgx_scripts

Language:Shell100

GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Language:PythonGPL-3.0100

maxbin2_custom

Decluttered and enhanced scripts for MaxBin2

Language:PerlBSD-2-Clause100

MetGEMs

Community Metabolic Network constructor

Language:PythonApache-2.0100

mruehlemann.github.io

GitHub IO

Language:SCSSCC0-1.0100

LaMeta

LaMeta - getting more from your metagenomic data (like you used to...)

Language:NextflowBSD-3-Clause020

phaat

PAAT uses phylogenetic trees to refine differential abundance signals

Language:R010

16s_cnv_correction_databases

000

anvio

An analysis and visualization platform for 'omics data

Language:PythonGPL-3.0010

BiScoReTo

Language:R000

drep

Rapid comparison and dereplication of genomes

Language:Python010

global_enterotypes

Language:R000

GMBC_MGX_Scripts

Language:Shell000

GMMAT

Generalized linear Mixed Model Association Tests

Language:R010

madagascar_mgx_scripts

scripts for the analysis of madagascar metagenomes

Language:ShellBSD-3-Clause000

MetaCompass

MetaCompass: Reference-guided Assembly of Metagenomes

Language:PythonNOASSERTION000

metagenome_preproc

Language:Shell000

miQTL_cookbook

Language:Perl000

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

Language:Perl010

scripts

scripts for master's thesis

Language:Python010

Wu_Unifrac_R_Script

A repository for R scripts useful for data manipulation.

Language:JavaScript000

zoomicro

010