Robinson-Rechavi Group - Evolutionary Bioinformatics's repositories
A-robust-method-for-detecting-positive-selection-on-regulatory-sequences
We present an in silico mutagenesis based approach to transcription factor binding sites evolution, based on a machine learning model of binding.
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Adaptive-evolution-in-late-development-and-adult
Study the relative contributions of relaxation of purifying selection vs. increase in positive selection, in the observed high sequence divergence of genes from late development.
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expression-noise-across-fly-embryogenesis
studying the conflict between precision and stochasticity of gene expression during development
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fastcodeml
Optimization strategies for fast detection of positive selection on phylogenetic trees
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godon
Forked from https://bitbucket.org/Davydov/godon
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godon-tutorial
a demonstration of Godon usage; Godon is implementing codon model optimization written in Go
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RRTree
A program for relative-rate tests
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taxonbridge
R package to merge the NCBI taxonomy and the GBIF backbone taxonomy
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GPL-2.0000