Robinson-Rechavi Group - Evolutionary Bioinformatics's repositories
A-robust-method-for-detecting-positive-selection-on-regulatory-sequences
We present an in silico mutagenesis based approach to transcription factor binding sites evolution, based on a machine learning model of binding.
Adaptive-evolution-in-late-development-and-adult
Study the relative contributions of relaxation of purifying selection vs. increase in positive selection, in the observed high sequence divergence of genes from late development.
expression-noise-across-fly-embryogenesis
studying the conflict between precision and stochasticity of gene expression during development
fastcodeml
Optimization strategies for fast detection of positive selection on phylogenetic trees
godon
Forked from https://bitbucket.org/Davydov/godon
godon-tutorial
a demonstration of Godon usage; Godon is implementing codon model optimization written in Go
RRTree
A program for relative-rate tests
taxonbridge
R package to merge the NCBI taxonomy and the GBIF backbone taxonomy