mrliuw's repositories
alphafold
Open source code for AlphaFold.
bitacora
BITACORA: A Bioinformatics tool for gene family annotation
CoFly
WGCNA code for fly microarray data
ComplexHeatmap
Make Complex Heatmaps
cruk-summer-school-2018
Summer school course materials collection
D-SCRIPT
A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
Data-Science-Study-Paths-March-2019
A complete ML study path, focused on TensorFlow and Scikit-Learn
EpiDope
Prediction of B-cell epitopes from amino acid sequences using deep neural networks.
foldseek
Foldseek enables fast and sensitive comparisons of large structure sets. It reaches sensitivities similar to state-of-the-art structural aligners while being at least 20,000 times faster.
HLA-bind
Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction
idep
Integrated Differential Expression and Pathway analysis
MPAL-Single-Cell-2019
Publication Page for MPAL Paper 2019
mrliuw.github.io
my personal page
Multi-omics-analysis
Multi-omics analysis protocols by Lyu.
penda
PenDA is a rank-based method for personalized differential analysis.
RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
SemanticGO
A functional similarity analysis tool
ssGSEA2.0
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
zebrafishWGCNA
WGCNA code for zebrafish microarray data