mriffle

Michael Riffle's starred repositories

quantms

Quantitative mass spectrometry workflow.

Language:NextflowMIT2400

FERMO

Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.

Language:PythonMIT2900

OboToTerm

Convert ontology from .obo format to term-tables (old GO MySQL Database Schema)

Language:Python700

elfragmentador

This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention time and fragmentation).

Language:HTMLApache-2.0800

nf-encyclopedia

A NextFlow pipeline for chromatogram library DIA proteomics workflows

Language:NextflowApache-2.0600

ddamsproteomics

A Nextflow MS DDA proteomics pipeline

Language:NextflowMIT300

pyAscore

A python package for fast post translational modification localization, powered by Cython.

Language:PythonMIT1800

sage

Proteomics search & quantification so fast that it feels like magic

Language:RustMIT20400

ScrapedDuck

ScrapedDuck routinely scrapes LeekDuck.com and pushes the found data to a branch on this repository, for use by other external applications.

Language:JavaScriptAGPL-3.03600

hardklor

Automatically exported from code.google.com/p/hardklor

Language:C++900

RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.

Language:C#Apache-2.06300