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MPI EVA Bioinformatics (mpieva)

MPI EVA Bioinformatics

mpieva

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Minerva Research Group for Bioinformatics at the Max Planck Institute for Evolutionary Anthropology

Location:Leipzig, Germany

Home Page:https://bioinf.eva.mpg.de/

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MPI EVA Bioinformatics's repositories

mapAD

An aDNA aware short-read mapper

Language:RustLicense:MITStargazers:19Issues:2Issues:0

mapping-iterative-assembler

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

Language:CLicense:Artistic-2.0Stargazers:15Issues:4Issues:3

biohazard-tools

Udo Stenzel's biohazard-tools — a collection of command-line utilities for bioinformatics [MIRROR]

Language:HaskellLicense:BSD-3-ClauseStargazers:7Issues:3Issues:0

network-aware-bwa

the Burrows Wheeler Aligner with networking capabilities

Language:CLicense:GPL-3.0Stargazers:5Issues:1Issues:1

quicksand

A pipeline for the analysis of sedimentary ancient mtDNA

Language:NextflowLicense:MITStargazers:4Issues:0Issues:0

matchseq

Perl scripts for reconstructing the structure of double-stranded DNA fragments from single-stranded DNA libraries

Language:PerlLicense:MITStargazers:2Issues:2Issues:0

nuclear_sediment_pipeline

Scripts used within the sediment capture pipeline

Language:PythonLicense:MITStargazers:1Issues:0Issues:0

samtools-patched

an old copy of samtools (from samtools.sf.net) with lots of patches

Language:CLicense:MITStargazers:1Issues:1Issues:0

freeIbis

An efficient basecaller for Illumina sequencers with calibrated quality scores

Language:PythonStargazers:0Issues:2Issues:0

leeHom

Bayesian reconstruction of ancient DNA fragments

Language:C++License:GPL-3.0Stargazers:0Issues:2Issues:0

quicksand-build

The mpieva/quicksand helper pipeline

Language:NextflowLicense:MITStargazers:0Issues:1Issues:0

SpAl

Estimating Spurious Alignments in ancient DNA

Language:PythonStargazers:0Issues:1Issues:0

swot

Identify email addresses or domains names that belong to colleges or universities. Help automate the process of approving or rejecting academic discounts.

Language:KotlinLicense:MITStargazers:0Issues:2Issues:0

admixr

An R package for running ADMIXTOOLS analyses directly within R. See the project website at https://bodkan.net/admixr.

Language:RLicense:NOASSERTIONStargazers:0Issues:3Issues:0

aLib

Language:PythonStargazers:0Issues:3Issues:0

anfo

The ANFO ancient DNA mapper

Language:C++License:GPL-3.0Stargazers:0Issues:2Issues:1

BCL2BAM2FASTQ

Language:C++Stargazers:0Issues:2Issues:0

biohazard

Udo Stenzel's biohazard — a Haskell library for bioinformatics [MIRROR]

Language:HaskellLicense:BSD-3-ClauseStargazers:0Issues:2Issues:0

deML

Maximum likelihood demultiplexing

Language:C++License:GPL-3.0Stargazers:0Issues:3Issues:0

func

Kay Prüfer’s FUNC — a package for detecting significant associations between gene sets and ontological annotations

Language:C++License:GPL-2.0Stargazers:0Issues:2Issues:0

GOfuncR

R-package for GO-enrichment analyses

Stargazers:0Issues:0Issues:0

heffalump

Udo Stenzel’s Heffalump — a file format that stores genetic variation and the tool to work with it [MIRROR]

Language:HaskellLicense:GPL-3.0Stargazers:0Issues:3Issues:0

index_swapping

Perl script for identifying cross-contamination events that occurred between double-index libraries due to index swapping during library amplification or sequencing.

Language:PerlLicense:MITStargazers:0Issues:1Issues:0

jivebunny

Udo Stenzel’s jivebunny — a probabilistic demultiplexer for Illumina sequencing data [MIRROR]

Language:HaskellLicense:GPL-3.0Stargazers:0Issues:2Issues:0

libgab

A C++ class of useful little functions

Language:C++License:GPL-3.0Stargazers:0Issues:2Issues:0

perl-ngs

Udo Stenzel's perl-ngs — a collection of Perl tools for next-generation sequencing [MIRROR]

Language:PerlLicense:MITStargazers:0Issues:0Issues:0

schmutzi

Maximum a posteriori estimate of contamination for ancient samples

Language:C++Stargazers:0Issues:2Issues:0