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mpc-bioinformatics / ProtGraph

ProtGraph - A Graph-Generator for Proteins

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Cannot parse Isoform Mutagens and Conflicts for specific Proteins

Luxxii opened this issue · comments

commented

Currently some Proteins with Isoform Mutagens and Conflicts are currently skipped.

Example for Conflict: https://www.uniprot.org/uniprot/P52744.txt

Example for Mutagen: https://www.uniprot.org/uniprot/P35613.txt

commented

This is True for many more features... It looks like that the standard has been changed

Here and Example for a Variant: VAR_082850

commented

I cannot reproduce this error anymore. It seems like the error was not on our side, since i did not change the SP-EMBL parsing implementation.

However, t he variant is still unchecked and should be rechecked!

commented

Closing, since all examples cannot be reproduced