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mpc-bioinformatics / ProtGraph

ProtGraph - A Graph-Generator for Proteins

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Export: JanusGraph

Luxxii opened this issue · comments

commented

We currently only have exports to files and databases (redis and Postgres).

Those are not well suited to traverse and process graphs (postgres is actually very perfromant if the rec. depth is not large).

We need to use some dedicated graph processing algorithms/databases for such large graphs. Here JanusGraph is tested

commented

Export it via Gremlin?

commented

Export via Gremlin (experimental) is available and should also work for JanusGraph. However, keep in mind that this export is slow.