Yair Motro's repositories
blog
https://motroy.github.io/blog
bohra
A pipeline for bioinformatics analysis of bacterial genomes
drax
A pipeline for Detecting Resistome Associated taXa
GrapeTree
GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click the first link to launch: https://achtman-lab.github.io/GrapeTree/MSTree_holder.html
MIDAS
An integrated pipeline for estimating strain-level genomic variation from metagenomic data
motroy.github.io
https://motroy.github.io - website for sorting methods
notebooks
Jupyter and R Notebooks
online-cv
A minimal Jekyll Theme to host your resume (CV) from http://webjeda.com/online-cv/
PlasmidCoverage
Script to obtain plasmid id from WGS data using bowtie2 to map
qiime2-rstudio-example
Example use of qiime2 and rstudio for 16S gene microbiome analysis
referenceseeker
Rapid determination of appropriate reference genomes.
sandbox-2024
sandbox 2024
sandbox-202401
sandbox 202401
sandbox-202407
sandbox 202407
snipit
snipit: summarise snps relative to your reference sequence
tourmaline
Amplicon sequence processing workflow using QIIME 2 and Snakemake
WGS-mini-dataset
mini dataset for WGS pipeline testing