moskalenko

slurm-web

Slurm HPC workload manager web JS dashboard and JSON REST API

vcf_fa_extractor

Extract reference and all variant sequences from a vcf file into a multi-fasta file

galaxy

Data intensive biology for everyone.

tools-iuc

Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission

bioconda-recipes

Conda recipes for the bioconda channel.

beast2

Bayesian Evolutionary Analysis by Sampling Trees

biotools

Miscellaneous bioinformatics tools

btsbridge

CN_Learn

CN-Learn

ContaVect

Complete suite to analyse DNA contaminants of virus/vector preparation from NGS data

CPT_GffParser

An extensively featured Python parser for GFF format reading and writing

gentb-snakemake

From FASTQ file to antibiotic resistance prediction using RandomForest - the GenTB pipeline wrapped in snakemake

infrastructure-playbook

Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/

jupyterhub_moss

Jupyterhub MOdular Slurm Spawner

kickstart.nvim

Personal nvim configuration

mediawiki-extensions-Auth_remoteuser

Github mirror of MediaWiki extension Auth_remoteuser - our actual code is hosted with Gerrit (please see https://www.mediawiki.org/wiki/Developer_access for contributing)

mkdocs-include-markdown-plugin

Mkdocs Markdown includer plugin

nipype-pbs-workflows

Port of CTSIT nipype workflow for bedpostx to SLURM

phyluce

software for UCE (and general) phylogenomics

pika

Pure Python RabbitMQ/AMQP 0-9-1 client library

pyDNA

Collection of python 2.7 Utilities and Wrapper for DNA / NGS data manipulation

q2-SCNIC

A QIIME2 plugin for running SCNIC

rc_training_conda_envs

Rcorrector

Error correction for Illumina RNA-seq reads

sarabande

a python package to measure the 3/4 PCFs of discrete periodic data.

Sarek

University of Florida High Performance Computing Implementation of Sarek's Pipeline to detect germline or somatic variants from normal or tumour/normal whole-genome, whole exome, or targeted sequencing

singularity

Singularity: Application containers for Linux

tools-artbio

Collection of galaxy tools developed by the artbio-platform at the IBPS (Institut de Biologie Paris-Seine)

tools-devteam

Contains a set of Galaxy Tools mostly written by the Galaxy Team.

wASTRAL

Weighted version of ASTRAL