Ryan D. Morin Laboratory's repositories
lab_scripts
Consolidated scripts used by the Morin lab
morinlab.github.io
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LymphGenerator
The R code behind unified classification system for DLBCL
GAMBLR.data
Collection of Curated Data for Genomic Analysis of Mature B-cell Lymphomas in R
GAMBLR.predict
Collection of functions and helpers to classify B-cell lymphomas
WisecondorXtena
An improved version of the copy number caller, WisecondorX, that now infers purity and produces improved copy number calls from lpWGS data
targeted_seq_alignment_workflow
Snakemake workflow for aligning targeted Illumina sequencing data
GAMBLR.helpers
A collection of helper functions to support the functionality of GAMBLR-based packages
GAMBLR.results
A collection of functions to access results of the Genomic Analysis of Mature B-cell Lymphomas
GAMBLR.utils
Collection of functions that consist of the core functionality of GAMBLR
ADVISE
Workflow and analysis pipeline for the ADVISE project
ascat
ASCAT copy number R package
cappseq_snv_pipeline
Variant calling workflow for CAPPSeq data
dryclean
Irons out wrinkles in noisy coverage data using robust PCA
g3viz
Lollipop-diagram to interactively visualize genetic mutations
GAMBLR.viz
Collection of functions to make plots for Genomic Analysis of Mature B-cell Lymphomas in R
HotMAPS
Detects hotspot regions for somatic mutations in 3D protein structures
idt_umi_workflow
Workflow for processing CAPPSeq data sequenced using IDT's UMIs
JaBbA
MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
LLMPP.viz
R package for simplifying the use of standardized colours in R
llmpp_shiny
Dedicated shiny app for variant review
mbb
MBB course summaries
Meerkat
Deploying Meerkat for GAMBL
moroncolours
Colour schemes made by and used by Morons