morinlab / galaxy_tools

A collection of Galaxy tools and workflows for performing cancer genome analyses.

morinlab/galaxy_tools Issues

Make Docker Image for our toolbox
Updated 8 years ago
Draft Manuscript Finalized
Updated 8 years ago
Create Directory on NAS containing latest version of tools
Closed 8 years ago1
Wrap lab_scripts for Galaxy
Updated 8 years ago1
Test comet tool
Closed 8 years ago
Create morinkit v0.1.1 tool dependency package
Closed 8 years ago1
Create Anaconda3 (Python 3.5) tool dependency package
Closed 8 years ago2
Install libPNG in VM for Circos
Updated 8 years ago1
Create a Comet tool
Updated 8 years ago2
Create MAF data type
Updated 3 years ago
Integrate favourite MAFtools functions for visualization
Updated 8 years ago
Push minimal working tools to Test Toolshed
Updated 3 years ago
Update multiplot to use new colour scheme
Updated 8 years ago
Sync Gistic tool with Prasath’s latest modifications to his wrapper
Closed 8 years ago1
Add test PyClone tool using multiple samples
Updated 8 years ago1
Install rJava on VM as a dependency for Expands
Closed 8 years ago1
Create ensemble_caller Galaxy tool
Updated 3 years ago3
Make Slide deck for Monday
Closed 8 years ago
Apply Expands to exomes with known subclonal
Updated 8 years ago2
Extend PyClone Galaxy tool to use Selin’s new plotting function
Updated 8 years ago1
Finalize and deploy local Galaxy server for everyone to install their tools into
Closed 8 years ago
Generate exome from CPCGene genomes with known clonal structure
Updated 8 years ago
Recreate SNV and CNA Style Circos plot with TCGA data
Updated 8 years ago
Create SV Style Circos plot using TCGA data
Updated 8 years ago