Måns Magnusson's repositories
vcf_parser
Simple vcf parser, based on PyVCF
ped_parser
A python tool for parsing pedigree files
interval_tree
Python implementation of interval tree
gene-panels
Repo to share gene panels
query_phenomizer
Command line script for querying the phenomizer tool with HPO terms
extract_vcf
Python package to extract information from vcf files
score_mip_variants
Score variants in the [MIP](http://mip-api.readthedocs.org/en/latest/) fashon.
variant_integrity
Tool to check consistency in families
vcftoolbox
Small helpers for working with vcf files
citation-file-format
The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.
Folder-Structure-Conventions
Folder / directory structure options and naming conventions for software projects
iker_first
Homework games for kids
mongoengine
A Python Object-Document-Mapper for working with MongoDB
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
phizz-genes
Small django app to model genes
rhocall
Call regions of homozygosity and make tentative UPD calls
small_scripts
Repo with small scripts for analysing mostly genetic variants from vcf files
sqlmodel
SQL databases in Python, designed for simplicity, compatibility, and robustness.