monarch-ebi-dev

eqwriter

impc-ontology-pipeline

IMPC ontology pipeline

odk_utils

ebi-patternanalysis-pipeline

docker container that analyses all ontologies in the shared volumes corpus directory and returns markdown and csv files.

obographs-test

pato_survey

potato-phenotype-ontology

ro_survey

RO Survey interactive shiny app (Dockerised)

robot_tests

testobographs

VFB_neo4j

A repository of scripts for extending the OLS neo4J DB for use as a VFB back end server.

dipper-docker

Basic dockerised version of Dipper (https://github.com/monarch-initiative/dipper).

docker-neo4j-knowledgebase

Neo4j instance loaded with VFB KB

Docker-OLS-loader

Import data from OWL to NEO4J PROD DB

docker-sbt-owlery

Owlery server loaded with VFB.owl

hp_analysis

HPO analysis results

idserver.ui

For demo purposes, no production code

inferencereport

Simple command line tool that outputs subsumptions and equivalences seperated by imports that caused them

OLS

Ontology Lookup Service from SPOT at EBI

ontologies

Will be deleted soon, dont use.

ontologyinferenceanalysis

Analytics tool to get a brief understanding of the logical content of a set of ontologies, comparing different reasoners

Pheno_odk_test

A test repo demonstrating design pattern -based phenotype ontology development using the Ontology Development Kit

phenotype.utils

some utils

r-knitr

knits all Rmd files in shared volume

robot_test

Failing robot tests

vfbtriplestore

Do not use. Instance for loading basic RDF4J triplestore with instance data