molpopgen

fwdpy11

Forward-time simulation in Python using fwdpp

fwdpp

fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations

text2qti_example

text2qti_example

ancestry-recording-experiments

ancestry_graph

(Yet another) prototype of a new method for ancestry update

backpacking_food

DIY meals for backpacking

demes-rs

rust tools for the demes ecosystem

dod_experiments

Rust DOD experiments

dotfiles

Config files for various programs.

dynamic-ts

Dynamic tree sequences for forward simulations

edge_buffering_explanation

Pure Python description of efficient edge buffering

efficient_edge_recording

Example of efficient edge recording in forward simulation

fedora_notes

Notes on Fedora Linux setup

fwdpy11_infinitesimal

fwdpy11_statistical_tests

Suite of statistical tests for fwdpy11.

genetics_class_material

Material for the in-class portions of genetics (bio 97) at UCI.

jupyter_slides_for_courses

Course slides in Jupyter notebook format

list_container

Designing a container to hold many linked lists and use Vec to back the memory.

moments

msprime_remark_examples

examples of using msprime to provide slide content via pyodide

OpenCL-AMD-Fedora

AMD OpenCL userspace drivers for Fedora.

pybind11_with_static_archive

Experimenting with separating back end from pybind11 modules

pyo3learning

pyO3learning

remark_class_slides

Slides for UCI classes using remarkjs

rexams_test

Example of using the R exams pacakge

rust_scripting_experiments

rust_scripting_experiments

tskit

tskit provides a C and Python API for accessing, analysing and creating tree sequences - a highly efficient way of storing a set of related DNA sequences.

tskit_dev_envs

Docker environments for tskit development

tskit_parallel_presentation

Slides for tskit-dev presentation

unique_item_benchmarks

Benchmarking methods of tracking unique integers (rust)