Decon-eQTL

[Tatiana Karp]

Hello,
thank you for a very nice tool.

I have a question regarding the input files for Decon-eQTL java tool.
In your example file "fake_genotype_dosages.txt" the first line starts with a tab, as well as "predicted.cellcounts.scaled.txt" first line.

Is it crucial to have the first column name empty? Is it also the case for the "count.table.simulated.txt"?

Thank you

[Tatiana Karp]

I checked myself and both versions give the same result.
The example files are a bit confusing.

[Niek de Klein]

Apologies for the confusion, it does indeed work both ways.