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molgenis / systemsgenetics

Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool

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input file request for genotype harmonizer

sarahcn opened this issue · comments

commented

would be great for it to accept gzipped SHAPEIT2 input files (.haps.gz and .sample.gz)
otherwise i have to unzip and rezip.

thanks for considering! to have more harmony in my imputation basis :)

commented

Thank you for using our software. I agree this would be a nice space saving feature but unfortunately I will not be able implement this at the moment.