mojaveazure

seurat-disk

Interfaces for HDF5-based Single Cell File Formats

loomR

An R-based interface for loom files

angsd-wrapper

Utilities for analyzing next generation sequencing data

ggseurat

Methods to allow Seurat objects to be visualized with ggplot2

BLAST_to_BED

Convert BLAST XML alignments to BED format

SNP_Utils

Extract SNP positions from BLAST XML and SAM formats

SNPtoSEQ

Capture contextual sequences for a SNP

mojaveazure.r-universe.dev

Utilities

A repository full of bioinformatics-related utilities

anndata_updater

argmatch

BarcSeek

BarcSeek: A Flexible Barcode Partitioning Tool for Demultiplexing Genomic Sequencing Data

BruteForceAlgorithms

A collection of scripts for the Does[0]Compute? session on brute force algorithms

exdata

Document Code for Generating Datasets

ExOutBench

This package provides some tools for bench-marking the performance of expression outlier calling methods.

FreeSNPCalls

Pipeline for calling SNPs with Freebayes

kourami

Kourami: Graph-guided assembly for HLA alleles

mamisc

mojaveazure

ngsF

Estimation of per-individual inbreeding coefficients under a probabilistic framework

pbmc3k-sce

Pseudoscaffold_Annotator

A Python package for creating an annotation file for a pseudoscaffold

remotes

Install R packages from GitHub, GitLab, Bitbucket, git, svn repositories, URLs