Gwen's repositories
archs4py
Python package to load and query ARCHS4 data
Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
borg-land
🧠 Horizon AI Template - Trendiest Open-source ChatGPT UI AI Template & Starter Kit for React, NextJS & Chakra UI
DeepSeek-Coder
DeepSeek Coder: Let the Code Write Itself
DiffDock
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
DiffSBDD
A Euclidean diffusion model for structure-based drug design.
evo
DNA foundation modeling from molecular to genome scale
gromacs
Public/backup repository of the GROMACS molecular simulation toolkit. Please do not mine the metadata blindly; we use https://gitlab.com/gromacs/gromacs for code review and issue tracking.
longevity-genie
A model that should answer questions about genes and variants
Medical-RAG-using-Bio-Mistral-7B
This is a RAG implementation using Open Source stack. BioMistral 7B has been used to build this app along with PubMedBert as an embedding model, Qdrant as a self hosted Vector DB, and Langchain & Llama CPP as an orchestration frameworks.
mlx
MLX: An array framework for Apple silicon
Molecular-Dynamics-on-AWS-and-Cloud-Computing
Molecular Dynamics on Google Compute Engine, AWS (Amazon Web Services) and other Cloud Computing services
openborg
bite-size frictionless learning of new topics
posecheck
Pose checks for 3D Structure-based Drug Design methods
rnapolis-py
A Python library containing RNA-related bioinformatics functions and classes.
streamlit
Streamlit — A faster way to build and share data apps.
streamlit-example
Example Streamlit app that you can fork to test out share.streamlit.io
textbook_quality
Generate textbook-quality LLM pretraining data
ViennaRNA
The ViennaRNA Package
what_are_embeddings
A deep dive into embeddings starting from fundamentals