MOCASSIN-3.0
MOnte CArlo SimulationS of Ionized Nebulae, Version 3.0
3D Monte Carlo X-Ray Enabled Photoionization and Dust Radiative Transfer Code
Copyright (C) 2007 Barbara Ercolano
Installation
How to compile:
make mocassin
make mocassinWarm
make mocassinOutput
make mocassinPlot
What typical packages required to compile mocassin on linux:
gcc openmpi
or
intel/mpi
How to clean:
make clean
How to run:
mpirun -np N ./mocassin
where N is number of processors for parallel computing.
How to run mpirun on a supercomputer:
In the batches folder of mocassin-models, there are running batch examples for different job scheduling systems.
To submit a batch file on the Portable Batch System (PBS):
qsub mocassin_run.job
To submit a batch file on the Sun Grid Engine (SGE):
qsub mocassin_run.job
To submit a batch file on the Simple Linux Utility for Resource Management (SLURM):
sbatch mocassin_run.sh
References
-
Ercolano, B., Young, P. R., Drake, J. J., & Raymond, J. C, "X-Ray Enabled MOCASSIN: A Three-dimensional Code for Photoionized Media", ApJS, 175, 534-542, 2008
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Ercolano, B., Drake, J. J., Raymond, J. C., & Clarke, C. C., "X-Ray-Irradiated Protoplanetary Disk Atmospheres. I. Predicted Emission-Line Spectrum and Photoevaporation", ApJ, 688, 398-407, 2008
-
Ercolano, B., Clarke, C. J., & Drake, J. J., "X-Ray Irradiated Protoplanetary Disk Atmospheres. II. Predictions from Models in Hydrostatic Equilibrium", ApJ, 699, 1639, 2009