Installing ms_deisotope, get warning "The C extension could not be compiled"
azzamallow opened this issue · comments
I am trying to install ms_deisotope on my ubuntu machine, using python3.6. I checkout the code and run:
python3 setup.py install
results in:
Version is: '0.0.6'
local variable 'macros' referenced before assignment
Version is: '0.0.6'
/usr/lib/python3.6/distutils/dist.py:261: UserWarning: Unknown distribution option: 'project_urls'
warnings.warn(msg)
running install
running bdist_egg
running egg_info
...
Using /home/ubuntu/.local/lib/python3.6/site-packages
Finished processing dependencies for ms-deisotope==0.0.6
***************************************************************************
WARNING: The C extension could not be compiled, speedups are not enabled.
Plain-Python build succeeded.
***************************************************************************
How do I install ms_deisotope on my machine, with C extensions compiled?
Thank you for reporting this. I had a mistake in my setup.py script. I'll fix that shortly. In the meantime, you can work around the problem by installing Cython when building from source.
I've included the fix in commit d97f0e6.
@azzamallow can you confirm whether that change fixed the problem, please?
@mobiusklein sorry for the late reply, yes the changes fixed the problem. Thanks!