mobashgr

WeLT

A cost-sensitive BERT that handles the class imbalance for the task of biomedical NER.

acl-anthology

Data and software for building the ACL Anthology.

adapter-transformers

Huggingface Transformers + Adapters = ❤️

bio-ner

Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the-art models.

biobert-pytorch

PyTorch Implementation of BioBERT

BioCreative-VII-Track-2-NLM-CHEM-track-Full-text-Chemical-Identification

datasets

🤗 The largest hub of ready-to-use datasets for ML models with fast, easy-to-use and efficient data manipulation tools

drugprot-relation-extraction

This repository includes pytorch codes for using domain-specific BERT models, along with proposed const-BERT variants on the Drugprot track of BioCreative VII Challenge.

inception-external-recommender

Get annotation suggestions for the INCEpTION text annotation platform from spaCy, Sentence BERT, scikit-learn and more. Runs as a web-service compatible with the external recommender API of INCEpTION.

KGPool

[ACL 2021] KGPool: Dynamic Knowledge Graph Context Selection for Relation Extraction

mayoclinic-scrapper

Scrapping diseases information from Mayo Clinic and saving it in Neo4j

MTL-Bioinformatics-2016

WeLT-ASpERT

WeLT-ASpERT Trainer

WeLT-impact-on-BioNEL

WeLT-SpERT

WeLT-SpERT Model

WeLT-TablERT-CNN

WeLT TablERT-CNN Trainer

SciFive

SciFive: a text-text transformer model for biomedical literature

SolvingAlmostAnythingWithBert

BioBert Pytorch

transformers

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.