Martin Norgaard's repositories
petprep_hmc
PETPrep head motion correction workflow
petprep_extract_tacs
PETPrep BIDS App for extracting time activity curves for PET data
bids-examples
A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
bids-matlab
MATLAB / Octave tools for BIDS datasets
bids-specification
Brain Imaging Data Structure (BIDS) Specification
bids-validator
Validator for the Brain Imaging Data Structure
bloodstream
A PET BIDS blood-processing tool
cobidas-PET
A prototype web-app for a checklist for PET methods reporting
dcm2niix
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
eddymotion
Open-source eddy-current and head-motion correction for dMRI.
ENIGMA
The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. š¤
JuSpace
This is the repository for the JuSpace toolbox allowing for cross-modal correlations between imaging data and positron emission tomography derived information
nipype
Workflows and interfaces for neuroimaging packages
niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)
poldracklab.github.io
Poldracklab guide
psych-open-science-guide
Guide to open science practices for psychology
pybids
Python tools for querying and manipulating BIDS datasets.
pydra
Pydra Dataflow Engine
PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
rcps-modified-petprep
A heavily modified version of PETPrep to process rates of cerebral protein synthesis (rCPS) data from four NIMH studies.
scikit-learn-mooc
scikit-learn-mooc
statsthinking21-core
Core statistical text for Statistical Thinking in the 21st Century