mmore500

teeplot

organize data visualization output, automatically picking meaningful names based on semantic plotting variables

curaitor

hstrat

hstrat enables phylogenetic inference on distributed digital evolution populations

mmore500.github.io

My personal and academic site

alifedata-phyloinformatics-convert

alifedata-phyloinformatics-conversion helps apply traditional phyloinformatics software to alife standardized data

avida

Avida-1

Version 5 of the Avida Digital Evolution Software Platform.

bioio.org

Website for BI/O Seminar Series

colorclade

colorclade draws phylogenies with hierarchical coloring for easier visual comparison

compconf

compconf enables flexible, type-rich comptime configuration of Cerebras Software Language (CSL) projects

cookiecutter-dishtiny-project

downstream

downstream provides efficient, constant-space implementations of stream curation algorithms.

downstream-benchmark

hereditary-stratigraph-concept

Proof of concept work for hereditary stratigraph method

hopthru

My very own link shortener

hstrat-algorithm-analysis

Formal analysis of the hereditary stratigraphy algorithm

hstrat-evolutionary-inference

How can we use phylogenetic analysis to characterize evolutionary dynamics in distributed digital evolution populations?

hstrat-reconstruction-algo

hstrat-surface-concept

Algorithm development for lightweight fixed-length recency-proportional hereditary stratigraphy data structure

hypermutator-dynamics

llmtreethink

paperproject

phylo-df-concept

phylogeny-informed-evaluation

phylotrack-algorithm-analysis

Manuscript, split from hstrat-algorithm-analysis

pico-setup

pyrimidine

🧬OO implement of genetic algorithm by python

sepp

Ensemble of HMM methods (SEPP, TIPP, UPP)

whole-genome-dup

wse-async-ga

Cerebras Wafer-Scale Engine (WSE) kernel for evolution simulations and genetic algorithms