Martin Mokrejš's repositories
abyss
:microscope: Assemble large genomes using short reads
adapterremoval
AdapterRemoval v2 - rapid adapter trimming, identification, and read merging
bamql
Query language for filtering SAM/BAM reads
GenomicRanges
Container class to represent genomic locations and support genomic analysis
libdeflate
Heavily optimized library for DEFLATE/zlib/gzip compression and decompression
LINKS
⛓Long Interval Nucleotide K-mer Scaffolder
matplotlib
matplotlib: plotting with Python
nanocorrect
Experimental pipeline for correcting nanopore reads
nanopolish
Signal-level algorithms for MinION data
NxTrim
Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
seqtk
Toolkit for processing sequences in FASTA/Q formats
SOAPdenovo2
Next generation sequencing reads de novo assembler.
TPSdownloader
Fetch TPS cyclases information from various sources
transXpress-snakemake
transXpress: a Snakemake pipeline for rapid de novo transcriptome assembly and annotation
whisper-ctranslate2
Whisper command line client compatible with original OpenAI client based on CTranslate2.