mmjohn

positron

Positron, a next-generation data science IDE

ANARCI

Antibody Numbering and Antigen Receptor ClassIfication

AbNumber

Convenience Python APIs for antibody numbering using ANARCI

AntPack

Tools for annotation, processing and ML for antibody sequences

AbLang2

An antibody-specific language model focusing on NGL prediction

AntiBERTy

Antibody-specific masked language model

EATLM

Code for 'On Pre-trained Language Models For Antibody'

AbLang

AbLang: A language model for antibodies

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

efficient-evolution

Efficient evolution from protein language models

c-book-club

Modern C book club for R contributors

cheatsheets

Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.

partis

B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction

stanford-cs-230-deep-learning

VIP cheatsheets for Stanford's CS 230 Deep Learning

swmutsel

Implementation of the site-wise mutation-selection model (swMutSel) described in Tamuri et al. (2012, 2014) , and Tamuri and dos Reis (2022)

DSC385

ml-road

Machine Learning Resources, Practice and Research

LDhat

Estimate recombination rates from population genetic data

dataviz

A book covering the fundamentals of data visualization

SDS375

SDS 375 Data Visualization in R

vitae

R Markdown Résumés and CVs

Growth-expression-translation

torch

R Interface to Torch

keras3

R Interface to Keras

lecture_notes

Lecture Notes on Computational and Mathematical Population Genetics

handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

postcards

💌 Create simple, beautiful personal websites and landing pages using only R Markdown.

Popgen_teaching_code

deeplearning-biology

A list of deep learning implementations in biology

maclearn-short