mmiladi

phd_thesis_markdown

Template for writing a PhD thesis in Markdown

DEWSeq

R/Bioconductor package for e/iCLIP data analysis

renderthis

An R package for building xaringan slides into multiple outputs, including html, pdf, png, gif, pptx, and mp4.

audible-activator

Retrieves your activation data (activation_bytes) from Audible servers. Using https://github.com/inAudible-NG/tables project instead is recommended.

NanoSim

Nanopore sequence read simulator

npTranscript

Analysis of nanopore transcript sequence data

sars-cov-2-transcriptome

Supplemental code for "the architecture of SARS-CoV-2 transcriptome" paper

nanocompore

RNA modifications detection from Nanopore dRNA-Seq data

course_bio_philosophy

BoostNano

A segmentation toolkit for segment the Nanopore RNA signal.

StoatyDive

EpiNano

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads

statannot

add statistical annotations (pvalue significance) on an existing boxplot generated by seaborn boxplot

taeper

A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.

bulkvis

matplotlib-chord-diagram

plot chord diagram with matplotlib

Basecalling-comparison

A comparison of different Oxford Nanopore basecallers

backintime

Back In Time - An easy-to-use backup tool for GNU Linux using rsync in the back

mako

Analyte identification via squiggles.

porekit-python

A pythonic toolkit for working with Oxford Nanopore Data

nanopolish

Signal-level algorithms for MinION data

racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

albacore

Dockerfile for the Albacore basecaller from Oxford Nanopore

seaborn

Statistical data visualization in Python

ShaKer

SHApe simulation with graph KERnels

galaxy

Data intensive science for everyone.

galaxy-flavor-testing

Travis scripts to unify and ease the testing of Galaxy favors

remark

A simple, in-browser, markdown-driven slideshow tool.

hiclipr

hiCLIP data analysis package

asciimathml

A new home for asciimathml