mmatschiner

tutorials

Tutorials on phylogenetic and phylogenomic inference

F4

Assessing confidence in introgression among four populations

snapp_prep

Prepare XML input files for divergence-time estimation with SNAPP

kumara

Comment on Munoz-Rodriguez et al. (2018)

supergenes

anguilla

Code for Barth et al.

BIO395_2020

Instructions for 2020 version of BIO395 course

evol2019

Code for analyses presented at Evolution 2019

Fitchi

Haplotype genealogies based on Fitch distances

opsin_evolution

Code for Musilova et al.

panama

Code for Stange et al. (2018)

QuIBL

Quantifying Introgression via Branch Lengths

behaviour_gwas

Simulations of diversification with recombination and hybridization in LT cichlids with msprime

c-genie

Estimating the sizes of coalescent genes ("c-genes") and single-topology tracts.

CladeAge-Tutorial

Fossil-based divergence-time estimation with CladeAge

continental

Code for manuscript on the timeline of cichlid diversification across continents

fbd_test

An assessment of the robustness of the FBD process to model violations

foosball

Data and analysis of foosball matches with millanek.

msprime

A reimplementation of Hudson's classical ms simulator for modern data sets.

notothenioid_phylogenomics

Phylogenomic analyses of notothenioid and outgroup genomes