Giters
Mike Lin (mlin)

mlin

Geek Repo

232

followers

21

following

164

stars

Location:Honolulu, HI, USA

Home Page:https://www.mlin.net

Twitter:@DNAmlin

Github PK Tool:Github PK Tool

Organizations
ga4gh
openwdl
samtools
single-cell-data
vgteam

Mike Lin's starred repositories

zstd

Zstandard - Fast real-time compression algorithm

Language:CLicense:NOASSERTIONStargazers:22860Issues:412Issues:1383

duckdb

DuckDB is an analytical in-process SQL database management system

Language:C++License:MITStargazers:21062Issues:198Issues:4702

lark

Lark is a parsing toolkit for Python, built with a focus on ergonomics, performance and modularity.

Language:PythonLicense:MITStargazers:4638Issues:59Issues:884

cereal

A C++11 library for serialization

Language:C++License:BSD-3-ClauseStargazers:4105Issues:153Issues:612

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Language:PythonLicense:BSD-3-ClauseStargazers:3130Issues:160Issues:790

SQLiteCpp

SQLiteC++ (SQLiteCpp) is a smart and easy to use C++ SQLite3 wrapper.

Language:CLicense:MITStargazers:2144Issues:82Issues:242

chinook-database

Sample database for SQL Server, Oracle, MySQL, PostgreSQL, SQLite, DB2

Language:TSQLLicense:NOASSERTIONStargazers:1753Issues:54Issues:18

CTPL

Modern and efficient C++ Thread Pool Library

Language:C++License:Apache-2.0Stargazers:1746Issues:57Issues:21

bitsery

Your binary serialization library

Language:C++License:MITStargazers:1037Issues:25Issues:82

libdeflate

Heavily optimized library for DEFLATE/zlib/gzip compression and decompression

Language:CLicense:MITStargazers:969Issues:32Issues:141

glow

An open-source toolkit for large-scale genomic analysis

Language:ScalaLicense:Apache-2.0Stargazers:262Issues:19Issues:157

py-spinners

🔄 More than 60 spinners for terminal, python wrapper for amazing node library cli-spinners

Language:PythonLicense:MITStargazers:215Issues:5Issues:15

learn-wdl

Educational materials for learning WDL

Language:WDLLicense:BSD-3-ClauseStargazers:114Issues:10Issues:4

coitrees

A very fast interval tree data structure

Language:RustLicense:MITStargazers:105Issues:8Issues:9

archive

Simple, compact, endian-safe and header-only serialization/deserialization for C++

Language:C++License:UnlicenseStargazers:90Issues:9Issues:7

viral-pipelines

viral-ngs: complete pipelines

Language:WDLLicense:NOASSERTIONStargazers:51Issues:13Issues:56

caper

Cromwell/WDL wrapper for Python

Language:PythonLicense:MITStargazers:49Issues:12Issues:87

pytest-wdl

WDL plugin for pytest

Language:PythonLicense:Apache-2.0Stargazers:47Issues:8Issues:69

dxWDL

Workflow Description Language compiler for the DNAnexus platform

Language:JavaLicense:Apache-2.0Stargazers:40Issues:31Issues:110

wdl-ide

Rich IDE support for Workflow Description Language

Language:PythonLicense:BSD-3-ClauseStargazers:39Issues:11Issues:15

workflows

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Language:WDLLicense:MITStargazers:32Issues:10Issues:20

sapling

SAPLING: Suffix Array Piecewise Linear INdex for Genomics

Language:C++License:MITStargazers:25Issues:4Issues:1

wdlTools

WDL tools for parsing, type-checking, and more

Language:ScalaLicense:Apache-2.0Stargazers:23Issues:8Issues:33

vg_wdl

Workflow Description Language (WDL) scripts for common vg workflows

Language:WDLLicense:MITStargazers:15Issues:8Issues:12

dxfuse

FUSE filesystem for the DNAnexus storage system

Language:GoLicense:Apache-2.0Stargazers:14Issues:19Issues:5

wdl-aid

Automatic Input Documentation for WDL workflows

Language:PythonLicense:MITStargazers:11Issues:4Issues:4

htsget-refserver

Reference server implementation for the GA4GH HTSget API standard.

Language:GoLicense:Apache-2.0Stargazers:11Issues:2Issues:9

Testathon-2020

Repo For the WDL Testathon held February 18 - 19, 2020

Language:WDLStargazers:4Issues:5Issues:0

gel-htsget

Language:JavaScriptLicense:Apache-2.0Stargazers:3Issues:29Issues:0

miniwdl-feedstock

A conda-smithy repository for miniwdl.

License:BSD-3-ClauseStargazers:1Issues:0Issues:0