Mike Lin (mlin)

mlin

Geek Repo

Location:Honolulu, HI, USA

Home Page:https://www.mlin.net

Twitter:@DNAmlin

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Organizations
ga4gh
openwdl
samtools
single-cell-data
vgteam

Mike Lin's starred repositories

CTPL

Modern and efficient C++ Thread Pool Library

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learn-wdl

Educational materials for learning WDL

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duckdb

DuckDB is an analytical in-process SQL database management system

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chinook-database

Sample database for SQL Server, Oracle, MySQL, PostgreSQL, SQLite, DB2

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zstd

Zstandard - Fast real-time compression algorithm

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bitsery

Your binary serialization library

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cereal

A C++11 library for serialization

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archive

Simple, compact, endian-safe and header-only serialization/deserialization for C++

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SQLiteCpp

SQLiteC++ (SQLiteCpp) is a smart and easy to use C++ SQLite3 wrapper.

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miniwdl-feedstock

A conda-smithy repository for miniwdl.

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py-spinners

🔄 More than 60 spinners for terminal, python wrapper for amazing node library cli-spinners

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wdlTools

WDL tools for parsing, type-checking, and more

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lark

Lark is a parsing toolkit for Python, built with a focus on ergonomics, performance and modularity.

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viral-pipelines

viral-ngs: complete pipelines

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workflows

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

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Testathon-2020

Repo For the WDL Testathon held February 18 - 19, 2020

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sapling

SAPLING: Suffix Array Piecewise Linear INdex for Genomics

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libdeflate

Heavily optimized library for DEFLATE/zlib/gzip compression and decompression

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htsget-refserver

Reference server implementation for the GA4GH HTSget API standard.

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glow

An open-source toolkit for large-scale genomic analysis

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dxfuse

FUSE filesystem for the DNAnexus storage system

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pytest-wdl

WDL plugin for pytest

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deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

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dxWDL

Workflow Description Language compiler for the DNAnexus platform

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wdl-aid

Automatic Input Documentation for WDL workflows

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coitrees

A very fast interval tree data structure

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caper

Cromwell/WDL wrapper for Python

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wdl-ide

Rich IDE support for Workflow Description Language

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vg_wdl

Workflow Description Language (WDL) scripts for common vg workflows

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